SNP Report
Basic Infomation
| Name | rs11585274 dbSNP |
|---|---|
| Location | chr:1,160899210 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10797088 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10797089 | 0.83[EUR][1000 genomes] |
| rs10908809 | 0.81[EUR][1000 genomes] |
| rs11265529 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11587040 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12080285 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12740520 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1855186 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2184064 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3953093 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4656281 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4656282 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4656959 | 0.80[EUR][1000 genomes] |
| rs4656961 | 0.81[EUR][1000 genomes] |
| rs6427559 | 0.81[AMR][1000 genomes] |
| rs6700408 | 0.81[EUR][1000 genomes] |
| rs6703062 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7516660 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000198358 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014