SNP Report

Basic Infomation

Name	rs6704490 dbSNP
Location	chr:1,160864582
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10797088	0.86[EUR][1000 genomes]
rs10908808	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10908809	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11265510	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11587040	0.84[EUR][1000 genomes]
rs12080285	0.82[EUR][1000 genomes]
rs12740520	0.86[EUR][1000 genomes]
rs17387157	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1855186	0.86[EUR][1000 genomes]
rs1855187	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2039415	0.87[EUR][1000 genomes]
rs2184064	0.86[EUR][1000 genomes]
rs2236515	0.81[EUR][1000 genomes]
rs2274905	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2274907	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2274908	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2274909	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2274910	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2297559	0.87[EUR][1000 genomes]
rs34067571	0.83[AMR][1000 genomes]
rs3766356	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3766357	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3766359	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3818724	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3820094	0.81[EUR][1000 genomes]
rs3953093	0.85[EUR][1000 genomes]
rs4656282	0.81[EUR][1000 genomes]
rs4656955	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4656956	0.81[EUR][1000 genomes]
rs4656957	0.81[EUR][1000 genomes]
rs4656958	0.88[EUR][1000 genomes]
rs4656959	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4656960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4656961	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6427550	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6427551	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6427552	0.81[EUR][1000 genomes]
rs6427553	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6427554	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6658416	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6667400	0.80[AMR][1000 genomes]
rs6671490	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6691868	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6694415	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6700408	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6703062	0.85[EUR][1000 genomes]
rs6703406	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6703704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7411035	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7516660	0.85[EUR][1000 genomes]
rs7524351	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7532133	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7551697	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000213080	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)