SNP Report
Basic Infomation
| Name | rs7411035 dbSNP |
|---|---|
| Location | chr:1,160856076 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 49)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908808 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10908809 | 0.89[EUR][1000 genomes] |
| rs11265510 | 0.88[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.80[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11587040 | 0.88[CEU][hapmap];0.84[MEX][hapmap] |
| rs12126310 | 0.81[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap] |
| rs17387157 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1855186 | 0.88[CEU][hapmap];0.89[MEX][hapmap] |
| rs1855187 | 0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2039415 | 1.00[CEU][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2236515 | 0.96[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs2274905 | 0.96[CEU][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2274907 | 0.96[CEU][hapmap];0.82[GIH][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2274908 | 0.96[CEU][hapmap];0.83[GIH][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2274909 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2274910 | 0.96[CEU][hapmap];0.83[GIH][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2297559 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs34067571 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs3766356 | 0.96[CEU][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3766357 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3766359 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3818724 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3820094 | 0.96[CEU][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3829790 | 0.85[MEX][hapmap] |
| rs4656955 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4656956 | 0.96[CEU][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4656957 | 0.96[CEU][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs4656958 | 1.00[CEU][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4656959 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4656960 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4656961 | 0.89[EUR][1000 genomes] |
| rs4656971 | 0.85[MEX][hapmap] |
| rs6427550 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6427551 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6427552 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6427553 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6427554 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6658416 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6667400 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6671490 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6691868 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6694415 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6700408 | 0.89[EUR][1000 genomes] |
| rs6703406 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6703704 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6704490 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7516660 | 0.88[CEU][hapmap];0.84[MEX][hapmap] |
| rs7524351 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7532133 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7551697 | 0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ITLN1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014