SNP Report
Basic Infomation
| Name | rs4656958 dbSNP |
|---|---|
| Location | chr:1,160856964 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908808 | 0.92[EUR][1000 genomes] |
| rs10908809 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11265510 | 0.92[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs11587040 | 0.88[CEU][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap] |
| rs12126310 | 0.85[MEX][hapmap] |
| rs12740520 | 0.81[EUR][1000 genomes] |
| rs17387157 | 0.92[EUR][1000 genomes] |
| rs1855186 | 0.88[CEU][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.81[EUR][1000 genomes] |
| rs1855187 | 0.80[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs2039415 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2184064 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2236515 | 0.96[CEU][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2274905 | 0.96[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes] |
| rs2274907 | 0.96[CEU][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs2274908 | 0.96[CEU][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs2274909 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2274910 | 0.96[CEU][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2297559 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34067571 | 0.86[EUR][1000 genomes] |
| rs3766356 | 0.96[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes] |
| rs3766357 | 0.92[EUR][1000 genomes] |
| rs3766359 | 0.92[EUR][1000 genomes] |
| rs3818724 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3820094 | 0.96[CEU][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3829790 | 0.81[MEX][hapmap] |
| rs4656955 | 0.92[EUR][1000 genomes] |
| rs4656956 | 0.96[CEU][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4656957 | 0.96[CEU][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4656959 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4656960 | 0.89[EUR][1000 genomes] |
| rs4656961 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4656971 | 0.81[MEX][hapmap] |
| rs6427550 | 0.92[EUR][1000 genomes] |
| rs6427551 | 0.92[EUR][1000 genomes] |
| rs6427552 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6427553 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6427554 | 0.88[EUR][1000 genomes] |
| rs6658416 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6667400 | 0.86[EUR][1000 genomes] |
| rs6671490 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6691868 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6694415 | 0.89[EUR][1000 genomes] |
| rs6700408 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6703406 | 0.91[EUR][1000 genomes] |
| rs6703704 | 0.89[EUR][1000 genomes] |
| rs6704490 | 0.88[EUR][1000 genomes] |
| rs7411035 | 1.00[CEU][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7516660 | 0.88[CEU][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap] |
| rs7524351 | 0.92[EUR][1000 genomes] |
| rs7532133 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7551697 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ITLN1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014