SNP Report

Basic Infomation

Name	rs376374 dbSNP
Location	chr:16,11370616
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1019551	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11074957	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640295	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11641765	0.81[ASN][1000 genomes]
rs11865598	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12445900	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12447592	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1541702	0.80[JPT][hapmap]
rs1559394	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1646022	0.96[ASN][1000 genomes]
rs1690499	0.84[EUR][1000 genomes]
rs16958199	0.94[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs1794023	0.90[ASN][1000 genomes]
rs2070923	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2550475	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28567501	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28671554	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34764020	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4238603	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4340345	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4780359	0.89[ASN][1000 genomes]
rs4781057	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4781058	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs4781059	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4781060	0.89[ASN][1000 genomes]
rs4781062	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4781067	0.80[ASN][1000 genomes]
rs55833546	0.90[ASN][1000 genomes]
rs57125479	0.90[ASN][1000 genomes]
rs60535402	0.90[ASN][1000 genomes]
rs62023627	0.81[ASN][1000 genomes]
rs6498179	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs686774	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7205578	0.89[ASN][1000 genomes]
rs7206320	0.89[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs73511456	0.88[ASN][1000 genomes]
rs737008	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8045556	0.83[JPT][hapmap]
rs8054781	0.93[JPT][hapmap]
rs880341	0.84[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs929879	0.86[ASN][1000 genomes]
rs949429	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9673543	0.87[ASN][1000 genomes]
rs9922058	0.88[ASN][1000 genomes]
rs9930474	0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRM2	Proximal transcriptional regulation
PRM3	Proximal transcriptional regulation
ENSG00000212228	Proximal transcriptional regulation
PRM1	Distal transcriptional regulation
SOCS1	Distal transcriptional regulation
ENSG00000199668	Distal transcriptional regulation
RMI2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
C16orf75	Pritchard
C16orf75	Pritchard