SNP Report
Basic Infomation
| Name | rs1541702 dbSNP |
|---|---|
| Location | chr:16,11445552 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1019551 | 0.83[JPT][hapmap] |
| rs1061128 | 0.99[ASN][1000 genomes] |
| rs11074962 | 0.98[AMR][1000 genomes] |
| rs11074963 | 0.92[ASN][1000 genomes] |
| rs11640295 | 0.80[CHD][hapmap];0.83[JPT][hapmap] |
| rs11640306 | 0.90[CEU][hapmap] |
| rs11645019 | 0.98[AMR][1000 genomes] |
| rs11645412 | 0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11864235 | 0.82[AMR][1000 genomes] |
| rs12445900 | 0.83[JPT][hapmap] |
| rs1559391 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes] |
| rs1559394 | 0.83[JPT][hapmap] |
| rs1862804 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2032932 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2550475 | 0.83[JPT][hapmap] |
| rs376374 | 0.80[JPT][hapmap] |
| rs4238603 | 0.83[JPT][hapmap] |
| rs4340345 | 0.83[JPT][hapmap] |
| rs4352068 | 0.84[AMR][1000 genomes] |
| rs4352069 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4781062 | 0.81[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap] |
| rs4781067 | 0.84[AMR][1000 genomes] |
| rs58330032 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs58476855 | 0.91[AMR][1000 genomes] |
| rs60773055 | 0.95[AMR][1000 genomes] |
| rs61135975 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61652293 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6498179 | 0.83[JPT][hapmap] |
| rs7195267 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs737008 | 0.83[JPT][hapmap] |
| rs7500664 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs880341 | 0.83[JPT][hapmap] |
| rs889650 | 0.92[ASN][1000 genomes] |
| rs949429 | 0.83[JPT][hapmap] |
| rs9940863 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RMI2 | Proximal transcriptional regulation |
| ENSG00000262703 | Proximal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| ENSG00000238774 | Distal transcriptional regulation |
| ENSG00000262703 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014