SNP Report
Basic Infomation
| Name | rs1559391 dbSNP |
|---|---|
| Location | chr:16,11446134 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074962 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11640306 | 0.82[EUR][1000 genomes] |
| rs11645019 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11645412 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11859710 | 0.86[EUR][1000 genomes] |
| rs11864235 | 0.82[AMR][1000 genomes] |
| rs1541702 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes] |
| rs1862804 | 0.87[AMR][1000 genomes] |
| rs2032932 | 0.98[AMR][1000 genomes] |
| rs4352068 | 0.84[AMR][1000 genomes] |
| rs4352069 | 0.94[AMR][1000 genomes] |
| rs4781067 | 0.84[AMR][1000 genomes] |
| rs58330032 | 0.90[AMR][1000 genomes] |
| rs58476855 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60773055 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61135975 | 0.90[AMR][1000 genomes] |
| rs61652293 | 0.94[AMR][1000 genomes] |
| rs7195267 | 0.94[AMR][1000 genomes] |
| rs7500664 | 0.82[AMR][1000 genomes] |
| rs889651 | 0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000262703 | Proximal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| ENSG00000238774 | Distal transcriptional regulation |
| ENSG00000262703 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| C16orf75 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014