SNP Report

Basic Infomation

Name	rs58330032 dbSNP
Location	chr:16,11425655
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1019551	0.80[ASN][1000 genomes]
rs1061128	0.84[ASN][1000 genomes]
rs11074962	0.87[AMR][1000 genomes]
rs11640295	0.80[ASN][1000 genomes]
rs11641765	0.89[ASN][1000 genomes]
rs11645019	0.87[AMR][1000 genomes]
rs11645412	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11859710	0.85[AFR][1000 genomes]
rs11864235	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12445900	0.84[AMR][1000 genomes]
rs1541702	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1559391	0.90[AMR][1000 genomes]
rs16958199	0.82[AMR][1000 genomes]
rs1794023	0.80[ASN][1000 genomes]
rs1862804	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2032932	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28671554	0.80[ASN][1000 genomes]
rs2868409	0.86[ASN][1000 genomes]
rs4238603	0.80[ASN][1000 genomes]
rs4340345	0.80[ASN][1000 genomes]
rs4352068	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4352069	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4780359	0.82[ASN][1000 genomes]
rs4781058	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4781062	0.85[AMR][1000 genomes]
rs4781067	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55833546	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57125479	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58476855	0.87[AMR][1000 genomes]
rs60535402	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60773055	0.92[AMR][1000 genomes]
rs60830387	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61135975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61652293	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62023627	0.89[ASN][1000 genomes]
rs6498179	0.80[ASN][1000 genomes]
rs7195267	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7206320	0.80[ASN][1000 genomes]
rs73511456	0.82[AMR][1000 genomes]
rs7500664	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs880341	0.85[AMR][1000 genomes]
rs929879	0.84[AMR][1000 genomes]
rs9930474	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9940863	0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SOCS1	Distal transcriptional regulation
RMI2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)