SNP Report
Basic Infomation
| Name | rs1559394 dbSNP |
|---|---|
| Location | chr:16,11369205 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 49)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1019551 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11074957 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11640295 | 0.90[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11641765 | 0.84[ASN][1000 genomes] |
| rs11864235 | 0.83[ASN][1000 genomes] |
| rs11865598 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12445900 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12447592 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1541702 | 0.83[JPT][hapmap] |
| rs1646022 | 1.00[ASN][1000 genomes] |
| rs1690499 | 0.84[EUR][1000 genomes] |
| rs16958199 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs1794023 | 0.94[ASN][1000 genomes] |
| rs1862804 | 0.82[ASN][1000 genomes] |
| rs2070923 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2550475 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28567501 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28671554 | 0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34764020 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs376374 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3844576 | 0.83[ASN][1000 genomes] |
| rs4238603 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4340345 | 0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4352068 | 0.82[ASN][1000 genomes] |
| rs4780359 | 0.93[ASN][1000 genomes] |
| rs4781057 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4781058 | 0.89[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4781059 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4781060 | 0.93[ASN][1000 genomes] |
| rs4781062 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4781067 | 0.84[ASN][1000 genomes] |
| rs55833546 | 0.94[ASN][1000 genomes] |
| rs57125479 | 0.94[ASN][1000 genomes] |
| rs60535402 | 0.94[ASN][1000 genomes] |
| rs62023627 | 0.84[ASN][1000 genomes] |
| rs6498179 | 0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs686774 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7205578 | 0.93[ASN][1000 genomes] |
| rs7206320 | 0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs73511456 | 0.92[ASN][1000 genomes] |
| rs737008 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8045556 | 0.84[JPT][hapmap] |
| rs8054781 | 0.94[JPT][hapmap] |
| rs880341 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs929879 | 0.90[ASN][1000 genomes] |
| rs949429 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9673543 | 0.83[ASN][1000 genomes] |
| rs9922058 | 0.92[ASN][1000 genomes] |
| rs9930474 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRM3 | Proximal transcriptional regulation |
| ENSG00000212228 | Proximal transcriptional regulation |
| TNP2 | Distal transcriptional regulation |
| PRM3 | Distal transcriptional regulation |
| ENSG00000212228 | Distal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014