SNP Report
Basic Infomation
| Name | rs8045556 dbSNP |
|---|---|
| Location | chr:16,11371425 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1019551 | 0.85[JPT][hapmap] |
| rs11640295 | 0.84[JPT][hapmap] |
| rs12445628 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12445900 | 0.85[JPT][hapmap] |
| rs1559394 | 0.84[JPT][hapmap] |
| rs2550475 | 0.85[JPT][hapmap] |
| rs3760114 | 1.00[CEU][hapmap] |
| rs376374 | 0.83[JPT][hapmap] |
| rs3826266 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3973550 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4238603 | 0.85[JPT][hapmap] |
| rs4340345 | 0.84[JPT][hapmap] |
| rs4780360 | 0.91[AMR][1000 genomes] |
| rs4781058 | 0.95[JPT][hapmap] |
| rs4781061 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4781062 | 0.84[JPT][hapmap] |
| rs59124406 | 0.81[EUR][1000 genomes] |
| rs6498179 | 0.84[JPT][hapmap] |
| rs7194175 | 1.00[CEU][hapmap] |
| rs737008 | 0.84[JPT][hapmap] |
| rs8054781 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes] |
| rs949429 | 0.84[JPT][hapmap] |
| rs9673278 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRM2 | Proximal transcriptional regulation |
| PRM3 | Proximal transcriptional regulation |
| ENSG00000212228 | Proximal transcriptional regulation |
| PRM1 | Distal transcriptional regulation |
| ENSG00000199668 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014