SNP Report
Basic Infomation
| Name | rs320115 dbSNP |
|---|---|
| Location | chr:11,63686166 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897460 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs11231634 | 1.00[ASN][1000 genomes] |
| rs11231696 | 1.00[MEX][hapmap] |
| rs11822339 | 1.00[JPT][hapmap] |
| rs12099085 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs12271959 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs12283898 | 1.00[MEX][hapmap] |
| rs12285245 | 1.00[MEX][hapmap] |
| rs1392118 | 0.91[ASN][1000 genomes] |
| rs17403349 | 1.00[TSI][hapmap] |
| rs2036269 | 1.00[MEX][hapmap] |
| rs2133548 | 1.00[JPT][hapmap] |
| rs2622417 | 1.00[MEX][hapmap] |
| rs2701549 | 1.00[MEX][hapmap] |
| rs320110 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs4375445 | 1.00[ASN][1000 genomes] |
| rs57219930 | 1.00[ASN][1000 genomes] |
| rs57859020 | 0.87[AFR][1000 genomes] |
| rs58678024 | 1.00[ASN][1000 genomes] |
| rs60791209 | 0.91[ASN][1000 genomes] |
| rs61141225 | 0.91[ASN][1000 genomes] |
| rs7123788 | 1.00[TSI][hapmap] |
| rs7127354 | 1.00[JPT][hapmap] |
| rs7129685 | 1.00[MEX][hapmap] |
| rs7130187 | 1.00[JPT][hapmap] |
| rs73494120 | 1.00[ASN][1000 genomes] |
| rs7933899 | 1.00[TSI][hapmap] |
| rs7948611 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7948681 | 1.00[TSI][hapmap] |
| rs7952003 | 1.00[TSI][hapmap] |
| rs904594 | 0.83[GIH][hapmap] |
| rs9804541 | 1.00[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RCOR2 | Proximal transcriptional regulation |
| CXCR4 | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014