SNP Report
Basic Infomation
| Name | rs12285245 dbSNP |
|---|---|
| Location | chr:11,63570347 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897448 | 0.86[AFR][1000 genomes] |
| rs12278871 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12283898 | 0.89[ASW][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs12291587 | 0.85[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2957205 | 0.92[ASN][1000 genomes] |
| rs3016160 | 0.92[ASN][1000 genomes] |
| rs320115 | 1.00[MEX][hapmap] |
| rs3740635 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs510804 | 0.92[ASN][1000 genomes] |
| rs580155 | 1.00[ASN][1000 genomes] |
| rs598301 | 1.00[ASN][1000 genomes] |
| rs623539 | 0.92[ASN][1000 genomes] |
| rs7113873 | 0.92[ASN][1000 genomes] |
| rs7129685 | 1.00[MEX][hapmap] |
| rs73492249 | 1.00[ASN][1000 genomes] |
| rs73492252 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000264519 | Proximal transcriptional regulation |
| ZNF248 | Distal transcriptional regulation |
| C11orf84 | Distal transcriptional regulation |
| ENSG00000255651 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014