SNP Report
Basic Infomation
| Name | rs7113873 dbSNP |
|---|---|
| Location | chr:11,63580695 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12278871 | 0.92[ASN][1000 genomes] |
| rs12285245 | 0.92[ASN][1000 genomes] |
| rs12291587 | 1.00[ASN][1000 genomes] |
| rs2957205 | 1.00[ASN][1000 genomes] |
| rs3016160 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3740635 | 0.92[ASN][1000 genomes] |
| rs510804 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs580155 | 0.92[ASN][1000 genomes] |
| rs598301 | 0.92[ASN][1000 genomes] |
| rs623539 | 1.00[ASN][1000 genomes] |
| rs73492249 | 0.92[ASN][1000 genomes] |
| rs73492252 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C11orf84 | Proximal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| C14orf80 | Distal transcriptional regulation |
| FTL | Distal transcriptional regulation |
| PHKA2 | Distal transcriptional regulation |
| RTN3 | Distal transcriptional regulation |
| C11orf95 | Distal transcriptional regulation |
| ENSG00000255651 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| REV1 | Distal transcriptional regulation |
| ATL3 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| ZBTB3 | Distal transcriptional regulation |
| C11orf84 | Distal transcriptional regulation |
| ZFR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014