SNP Report
Basic Infomation
| Name | rs7129685 dbSNP |
|---|---|
| Location | chr:11,63702910 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231645 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231657 | 0.95[MKK][hapmap] |
| rs11231674 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs11231696 | 1.00[MEX][hapmap] |
| rs12283898 | 1.00[MEX][hapmap] |
| rs12285245 | 1.00[MEX][hapmap] |
| rs12798491 | 0.87[LWK][hapmap];0.81[AFR][1000 genomes] |
| rs2036269 | 1.00[MEX][hapmap] |
| rs2622417 | 1.00[MEX][hapmap] |
| rs2701549 | 1.00[MEX][hapmap] |
| rs320115 | 1.00[MEX][hapmap] |
| rs60668438 | 0.84[AFR][1000 genomes] |
| rs7342201 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73494171 | 0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NAA40 | Proximal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014