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rVarBase
SNP Report
Basic Infomation
Name
rs2622417  
dbSNP
Location
chr:11,63832142
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11231696
1.00[MEX][hapmap]
rs2036269
1.00[MEX][hapmap]
rs2325718
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2622419
1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2701547
0.88[YRI][hapmap]
rs2701549
1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320115
1.00[MEX][hapmap]
rs7129685
1.00[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
MACROD1
RNA binding protein mediated regulation
ENSG00000256824
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)