SNP Report
Basic Infomation
| Name | rs7127354 dbSNP |
|---|---|
| Location | chr:11,63744152 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897460 | 1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs11822339 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11827620 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12099085 | 1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs12271959 | 1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs1392118 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2133547 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2133548 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs320110 | 1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs320112 | 1.00[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs320115 | 1.00[JPT][hapmap] |
| rs320117 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs320124 | 0.95[ASN][1000 genomes] |
| rs320150 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs320157 | 1.00[YRI][hapmap] |
| rs320158 | 1.00[YRI][hapmap] |
| rs56781057 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57899119 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59818390 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs60791209 | 0.82[ASN][1000 genomes] |
| rs61141225 | 0.82[ASN][1000 genomes] |
| rs6591831 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6591832 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7106236 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7113021 | 1.00[AFR][1000 genomes] |
| rs7130187 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73496067 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73496068 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RCOR2 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014