SNP Report
Basic Infomation
| Name | rs320117 dbSNP |
|---|---|
| Location | chr:11,63728352 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11822339 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11827620 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1392118 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2133547 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2133548 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs320112 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs320124 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56781057 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs57899119 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59818390 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60791209 | 0.87[ASN][1000 genomes] |
| rs61141225 | 0.87[ASN][1000 genomes] |
| rs6591831 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6591832 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7106236 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7113021 | 0.96[AFR][1000 genomes] |
| rs7127354 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7130187 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73496067 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73496068 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RNU6-45 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014