SNP Report
Basic Infomation
| Name | rs3121567 dbSNP |
|---|---|
| Location | chr:1,943468 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13302924 | 1.00[AMR][1000 genomes] |
| rs13303172 | 1.00[EUR][1000 genomes] |
| rs15842 | 1.00[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs2341362 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes] |
| rs2341365 | 1.00[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs2465124 | 0.91[EUR][1000 genomes] |
| rs2465126 | 1.00[CEU][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs2488992 | 0.80[EUR][1000 genomes] |
| rs2489000 | 0.84[AMR][1000 genomes] |
| rs2710869 | 0.84[AMR][1000 genomes] |
| rs2710875 | 0.82[MEX][hapmap] |
| rs2799069 | 0.91[EUR][1000 genomes] |
| rs2799070 | 0.85[EUR][1000 genomes] |
| rs28394749 | 1.00[AMR][1000 genomes] |
| rs28422907 | 0.83[AMR][1000 genomes] |
| rs28622096 | 1.00[AMR][1000 genomes] |
| rs3121565 | 0.91[EUR][1000 genomes] |
| rs3121566 | 0.91[EUR][1000 genomes] |
| rs3121568 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs3135457 | 0.91[EUR][1000 genomes] |
| rs35002855 | 0.84[AMR][1000 genomes] |
| rs35562283 | 0.92[AMR][1000 genomes] |
| rs4615788 | 0.91[EUR][1000 genomes] |
| rs4970351 | 1.00[AMR][1000 genomes] |
| rs4970403 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes] |
| rs6605060 | 1.00[AMR][1000 genomes] |
| rs6605061 | 0.92[AMR][1000 genomes] |
| rs6662128 | 0.96[AMR][1000 genomes] |
| rs6665000 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes] |
| rs6671243 | 1.00[AMR][1000 genomes] |
| rs6677020 | 0.92[AMR][1000 genomes] |
| rs6677131 | 0.92[AMR][1000 genomes] |
| rs9442609 | 1.00[AMR][1000 genomes] |
| rs9442610 | 0.92[AMR][1000 genomes] |
| rs9777703 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes] |
| rs9777939 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCNN1D | Distal transcriptional regulation |
| ENSG00000224969 | Distal transcriptional regulation |
| ISG15 | Distal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| PLEKHN1 | Distal transcriptional regulation |
| ENSG00000242590 | Distal transcriptional regulation |
| ENSG00000217801 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014