SNP Report
Basic Infomation
| Name | rs2710869 dbSNP |
|---|---|
| Location | chr:1,938116 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13302924 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2005437 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2341362 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2489000 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2710881 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2799061 | 0.80[EUR][1000 genomes] |
| rs2799063 | 0.81[EUR][1000 genomes] |
| rs28394749 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs28622096 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3121566 | 0.82[AMR][1000 genomes] |
| rs3121567 | 0.84[AMR][1000 genomes] |
| rs3121568 | 0.82[AMR][1000 genomes] |
| rs3128112 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs35002855 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs35562283 | 0.91[AMR][1000 genomes] |
| rs4970351 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4970403 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6605060 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6662128 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6665000 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6671243 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6677020 | 0.91[AMR][1000 genomes] |
| rs6677131 | 0.91[AMR][1000 genomes] |
| rs9442609 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9777703 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9777939 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HES4 | Proximal transcriptional regulation |
| SAMD11 | Distal transcriptional regulation |
| NOC2L | Distal transcriptional regulation |
| KLHL17 | Distal transcriptional regulation |
| PLEKHN1 | Distal transcriptional regulation |
| C1orf170 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| ENSG00000230415 | Distal transcriptional regulation |
| C1orf159 | Distal transcriptional regulation |
| MRPL20 | Distal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| ENSG00000217801 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| ENSG00000242590 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014