SNP Report
Basic Infomation
| Name | rs2799070 dbSNP |
|---|---|
| Location | chr:1,949925 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13303172 | 0.85[EUR][1000 genomes] |
| rs15842 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2341365 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2465124 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2465125 | 0.80[EUR][1000 genomes] |
| rs2465126 | 0.88[EUR][1000 genomes] |
| rs2799069 | 0.94[EUR][1000 genomes] |
| rs3121565 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3121566 | 0.94[EUR][1000 genomes] |
| rs3121567 | 0.85[EUR][1000 genomes] |
| rs3135457 | 0.88[EUR][1000 genomes] |
| rs3829742 | 1.00[ASN][1000 genomes] |
| rs4615788 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs8997 | 0.83[EUR][1000 genomes] |
| rs9697682 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000224969 | Proximal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| ENSG00000231702 | Distal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| ENSG00000242590 | Distal transcriptional regulation |
| ENSG00000217801 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014