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rVarBase
SNP Report
Basic Infomation
Name
rs2465124  
dbSNP
Location
chr:1,949235
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs13303172
0.91[EUR][1000 genomes]
rs15842
0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2341365
0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2465126
0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2799069
0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2799070
0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3121565
0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3121566
1.00[EUR][1000 genomes]
rs3121567
0.91[EUR][1000 genomes]
rs3135457
0.82[EUR][1000 genomes]
rs4615788
0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000224969
Proximal transcriptional regulation
HES4
Distal transcriptional regulation
ENSG00000231702
Distal transcriptional regulation
AGRN
Distal transcriptional regulation
UBE2J2
Distal transcriptional regulation
ENSG00000242590
Distal transcriptional regulation
ENSG00000217801
Distal transcriptional regulation
RPL31
Distal transcriptional regulation
ENSG00000223947
Distal transcriptional regulation
ISG15
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)