SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13303172	0.91[EUR][1000 genomes]
rs2341362	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs2341365	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2465124	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2465126	1.00[CEU][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs2799069	1.00[EUR][1000 genomes]
rs2799070	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3121565	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3121566	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3121567	1.00[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs3135457	0.82[EUR][1000 genomes]
rs4615788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4970403	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs6665000	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs9777703	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs9777939	1.00[CEU][hapmap];0.81[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
ISG15	Proximal transcriptional regulation
ENSG00000224969	Proximal transcriptional regulation
HES4	Distal transcriptional regulation
ENSG00000231702	Distal transcriptional regulation
AGRN	Distal transcriptional regulation
UBE2J2	Distal transcriptional regulation
ENSG00000242590	Distal transcriptional regulation
ENSG00000217801	Distal transcriptional regulation
RPL31	Distal transcriptional regulation
ENSG00000223947	Distal transcriptional regulation
ISG15	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)