SNP Report

Basic Infomation

Name	rs2885676 dbSNP
Location	chr:1,155813444
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10796952	0.89[AMR][1000 genomes]
rs11264417	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1625821	1.00[AMR][1000 genomes]
rs1627630	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs168343	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs171168	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749412	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1756242	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765280	0.96[AFR][1000 genomes]
rs1765283	0.87[AFR][1000 genomes]
rs1765286	0.88[AFR][1000 genomes]
rs1886618	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2136920	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2175389	1.00[AMR][1000 genomes]
rs2363017	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2485470	0.92[AFR][1000 genomes]
rs2485472	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2666828	0.89[AMR][1000 genomes]
rs348188	0.89[AMR][1000 genomes]
rs348189	0.89[AMR][1000 genomes]
rs348191	1.00[AMR][1000 genomes]
rs348193	0.89[AMR][1000 genomes]
rs348197	1.00[AMR][1000 genomes]
rs348199	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348200	1.00[AMR][1000 genomes]
rs348207	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348208	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348209	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4581273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs492669	0.89[AMR][1000 genomes]
rs4971058	0.81[ASW][hapmap];0.89[AMR][1000 genomes]
rs512551	0.93[ASW][hapmap];0.80[LWK][hapmap];0.82[MKK][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs540380	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs568672	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606755	1.00[AMR][1000 genomes]
rs607036	0.81[ASW][hapmap];0.89[AMR][1000 genomes]
rs617232	0.81[ASW][hapmap];0.89[AMR][1000 genomes]
rs6427290	1.00[AFR][1000 genomes]
rs6688399	0.93[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs670787	0.89[AMR][1000 genomes]
rs708613	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8179457	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs822017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822021	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822024	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822027	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822479	0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822483	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822484	0.83[AFR][1000 genomes]
rs822487	0.98[AFR][1000 genomes]
rs822492	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822496	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs822498	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822521	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs822522	1.00[AMR][1000 genomes]
rs866603	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427222	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427227	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427229	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000234937	Proximal transcriptional regulation
GON4L	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)