SNP Report

Basic Infomation

Name	rs822521 dbSNP
Location	chr:1,155838267
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11264417	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs1627630	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs171168	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs1749412	0.93[ASW][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes]
rs1749413	0.83[AFR][1000 genomes]
rs1749414	0.90[AFR][1000 genomes]
rs1756242	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs1765280	0.87[AFR][1000 genomes]
rs1886618	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs2485472	0.90[AFR][1000 genomes]
rs2885676	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs348207	0.88[YRI][hapmap]
rs4581273	0.85[AFR][1000 genomes]
rs512551	0.86[ASW][hapmap]
rs540380	0.93[ASW][hapmap];0.88[YRI][hapmap]
rs6427290	0.85[AFR][1000 genomes]
rs6688399	0.87[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs708613	0.88[YRI][hapmap]
rs822021	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs822027	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs822479	0.80[YRI][hapmap];0.81[AFR][1000 genomes]
rs822483	0.83[AFR][1000 genomes]
rs822487	0.87[AFR][1000 genomes]
rs822492	0.80[AFR][1000 genomes]
rs822496	0.93[ASW][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs822498	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs822520	1.00[AMR][1000 genomes]
rs866603	0.93[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SYT11	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)