SNP Report
Basic Infomation
| Name | rs1749412 dbSNP |
|---|---|
| Location | chr:1,155829360 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 63)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796952 | 0.89[AMR][1000 genomes] |
| rs11264417 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs1625821 | 1.00[AMR][1000 genomes] |
| rs1627630 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs168343 | 1.00[AMR][1000 genomes] |
| rs171168 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs1749413 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1749414 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1749422 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1756242 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1765280 | 0.97[AFR][1000 genomes] |
| rs1765283 | 0.82[AFR][1000 genomes] |
| rs1765286 | 0.83[AFR][1000 genomes] |
| rs1886618 | 0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2136920 | 1.00[AMR][1000 genomes] |
| rs2175389 | 1.00[AMR][1000 genomes] |
| rs2363017 | 1.00[AMR][1000 genomes] |
| rs2485470 | 0.87[AFR][1000 genomes] |
| rs2485472 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2666828 | 0.89[AMR][1000 genomes] |
| rs2885676 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs348188 | 0.89[AMR][1000 genomes] |
| rs348189 | 0.89[AMR][1000 genomes] |
| rs348191 | 1.00[AMR][1000 genomes] |
| rs348193 | 0.89[AMR][1000 genomes] |
| rs348197 | 1.00[AMR][1000 genomes] |
| rs348199 | 1.00[AMR][1000 genomes] |
| rs348200 | 1.00[AMR][1000 genomes] |
| rs348207 | 0.96[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs348208 | 1.00[AMR][1000 genomes] |
| rs348209 | 1.00[AMR][1000 genomes] |
| rs4581273 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs492669 | 0.89[AMR][1000 genomes] |
| rs4971058 | 0.89[AMR][1000 genomes] |
| rs512551 | 0.93[ASW][hapmap];0.82[MKK][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs540380 | 1.00[ASW][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs568672 | 1.00[AMR][1000 genomes] |
| rs606755 | 1.00[AMR][1000 genomes] |
| rs607036 | 0.81[ASW][hapmap];0.89[AMR][1000 genomes] |
| rs617232 | 0.81[ASW][hapmap];0.89[AMR][1000 genomes] |
| rs6427290 | 0.95[AFR][1000 genomes] |
| rs6688399 | 0.93[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs670787 | 0.89[AMR][1000 genomes] |
| rs708613 | 0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs8179457 | 1.00[AMR][1000 genomes] |
| rs822017 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822021 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822023 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822024 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822027 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822479 | 0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822483 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822487 | 0.97[AFR][1000 genomes] |
| rs822492 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822496 | 1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs822498 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822521 | 0.93[ASW][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs822522 | 1.00[AMR][1000 genomes] |
| rs822524 | 0.81[AFR][1000 genomes] |
| rs866603 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9427222 | 1.00[AMR][1000 genomes] |
| rs9427227 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9427229 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GON4L | Proximal transcriptional regulation |
| SYT11 | Proximal transcriptional regulation |
| MSTO2P | Distal transcriptional regulation |
| RIT1 | Distal transcriptional regulation |
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| PMF1-BGLAP | Distal transcriptional regulation |
| PMF1 | Distal transcriptional regulation |
| ENSG00000201614 | Distal transcriptional regulation |
| KIAA0907 | Distal transcriptional regulation |
| SYT11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014