SNP Report
Basic Infomation
| Name | rs2493215 dbSNP |
|---|---|
| Location | chr:1,8007716 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1546846 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs161800 | 0.81[ASN][1000 genomes] |
| rs161802 | 0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs2131630 | 0.81[ASN][1000 genomes] |
| rs225092 | 0.81[ASN][1000 genomes] |
| rs225100 | 0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap] |
| rs225106 | 0.95[CHD][hapmap];0.87[MEX][hapmap] |
| rs225115 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs225119 | 0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs225120 | 0.81[ASN][1000 genomes] |
| rs226242 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs226248 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs226249 | 1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap] |
| rs226251 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes] |
| rs226253 | 0.86[ASN][1000 genomes] |
| rs226474 | 0.96[CEU][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs2300428 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2472862 | 0.81[ASN][1000 genomes] |
| rs2493214 | 0.85[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2493216 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2641116 | 0.82[ASN][1000 genomes] |
| rs28624 | 0.85[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap] |
| rs379920 | 0.83[ASN][1000 genomes] |
| rs397349 | 0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap] |
| rs400736 | 0.84[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap] |
| rs408320 | 0.85[CHB][hapmap];0.95[CHD][hapmap];0.86[MEX][hapmap] |
| rs442862 | 0.85[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap] |
| rs72854902 | 0.81[ASN][1000 genomes] |
| rs863171 | 0.84[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs9434948 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9434949 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNFRSF9 | Distal transcriptional regulation |
| PARK7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014