SNP Report
Basic Infomation
| Name | rs226251 dbSNP |
|---|---|
| Location | chr:1,8024690 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12563704 | 0.82[ASN][1000 genomes] |
| rs1546846 | 0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs161800 | 0.95[ASN][1000 genomes] |
| rs161802 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs161815 | 0.81[EUR][1000 genomes] |
| rs225092 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs225093 | 0.86[ASN][1000 genomes] |
| rs225100 | 0.91[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs225106 | 0.97[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap] |
| rs225110 | 0.81[JPT][hapmap] |
| rs225115 | 0.82[ASN][1000 genomes] |
| rs225119 | 0.82[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs225120 | 0.95[ASN][1000 genomes] |
| rs225123 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs225126 | 0.83[AMR][1000 genomes] |
| rs225129 | 0.81[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs226242 | 0.91[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs226248 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs226249 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap] |
| rs226253 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs226474 | 0.81[GIH][hapmap] |
| rs2493214 | 0.85[CHB][hapmap];0.85[CHD][hapmap] |
| rs2493215 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes] |
| rs2493216 | 0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2641116 | 0.92[ASN][1000 genomes] |
| rs28624 | 0.85[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap] |
| rs367481 | 0.91[ASN][1000 genomes] |
| rs370812 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs371452 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs379920 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs397349 | 0.90[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap] |
| rs400736 | 0.91[ASW][hapmap];0.88[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs408320 | 0.91[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs419683 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs442862 | 0.91[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4908488 | 0.86[LWK][hapmap];1.00[YRI][hapmap] |
| rs72854902 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7556398 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs863171 | 0.85[CHB][hapmap];0.85[CHD][hapmap] |
| rs9434948 | 0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9434949 | 0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PARK7 | Proximal transcriptional regulation |
| ENSG00000200344 | Distal transcriptional regulation |
| PARK7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014