SNP Report

Basic Infomation

Name	rs226253 dbSNP
Location	chr:1,8027706
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12563704	0.81[ASN][1000 genomes]
rs1546846	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs161800	0.94[ASN][1000 genomes]
rs161802	0.94[ASN][1000 genomes]
rs161815	0.81[EUR][1000 genomes]
rs225092	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs225093	0.85[ASN][1000 genomes]
rs225100	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs225115	0.81[ASN][1000 genomes]
rs225119	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs225120	0.94[ASN][1000 genomes]
rs225123	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225126	0.83[AMR][1000 genomes]
rs225129	0.81[AMR][1000 genomes]
rs226242	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs226248	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs226251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2493215	0.86[ASN][1000 genomes]
rs2493216	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2641116	0.93[ASN][1000 genomes]
rs367481	0.90[ASN][1000 genomes]
rs370812	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs371452	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs379920	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400736	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs408320	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs419683	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs442862	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72854902	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7556398	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9434948	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9434949	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PARK7	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)