SNP Report
Basic Infomation
| Name | rs379920 dbSNP |
|---|---|
| Location | chr:1,8028865 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12563704 | 0.81[ASN][1000 genomes] |
| rs1546846 | 0.82[ASN][1000 genomes] |
| rs161800 | 0.91[ASN][1000 genomes] |
| rs161802 | 0.91[ASN][1000 genomes] |
| rs161815 | 0.80[EUR][1000 genomes] |
| rs225092 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs225093 | 0.82[ASN][1000 genomes] |
| rs225100 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs225119 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs225120 | 0.91[ASN][1000 genomes] |
| rs225123 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs225126 | 0.81[AMR][1000 genomes] |
| rs226242 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs226248 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs226251 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs226253 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2493215 | 0.83[ASN][1000 genomes] |
| rs2493216 | 0.83[ASN][1000 genomes] |
| rs2641116 | 0.90[ASN][1000 genomes] |
| rs367481 | 0.87[ASN][1000 genomes] |
| rs370812 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs371452 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs400736 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs408320 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs419683 | 0.81[AMR][1000 genomes] |
| rs442862 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72854902 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7556398 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9434948 | 0.83[ASN][1000 genomes] |
| rs9434949 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000200344 | Distal transcriptional regulation |
| PARK7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014