SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 22)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1546846	0.81[ASN][1000 genomes]
rs161802	0.83[CHD][hapmap]
rs2131630	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225100	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs225106	0.83[CHD][hapmap]
rs225119	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs226242	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs226249	0.85[CHB][hapmap]
rs226251	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs226474	0.80[CEU][hapmap]
rs2300428	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2472862	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493214	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2493215	0.84[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs2493216	0.81[ASN][1000 genomes]
rs28624	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs397349	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs400736	0.81[JPT][hapmap]
rs408320	0.83[CHD][hapmap]
rs442862	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs9434948	0.81[ASN][1000 genomes]
rs9434949	0.81[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TNFRSF9	Distal transcriptional regulation
TNFRSF9	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 6)