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rVarBase
SNP Report
Basic Infomation
Name
rs2131630  
dbSNP
Location
chr:1,7990367
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1546846
0.81[ASN][1000 genomes]
rs2300428
0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2472862
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493214
0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2493215
0.81[ASN][1000 genomes]
rs2493216
0.81[ASN][1000 genomes]
rs863171
0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9434948
0.81[ASN][1000 genomes]
rs9434949
0.81[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
TNFRSF9
Distal transcriptional regulation
TNFRSF9
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)