SNP Report

Basic Infomation

Name	rs2297864 dbSNP
Location	chr:1,1177630
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11260566	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12087719	0.90[ASN][1000 genomes]
rs12089192	0.98[ASN][1000 genomes]
rs12093154	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12096091	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297863	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753342	0.90[ASN][1000 genomes]
rs3753343	0.90[ASN][1000 genomes]
rs3766186	0.84[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3766187	0.86[ASN][1000 genomes]
rs3766188	0.90[ASN][1000 genomes]
rs3766189	0.90[ASN][1000 genomes]
rs3813198	0.90[ASN][1000 genomes]
rs3813199	0.84[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3818646	0.82[CHD][hapmap]
rs4567233	0.81[EUR][1000 genomes]
rs55683245	0.89[ASN][1000 genomes]
rs55701216	0.90[ASN][1000 genomes]
rs55717744	0.90[ASN][1000 genomes]
rs55893507	0.90[ASN][1000 genomes]
rs56013947	0.89[ASN][1000 genomes]
rs56070543	0.90[ASN][1000 genomes]
rs56316126	0.90[ASN][1000 genomes]
rs56378990	0.90[ASN][1000 genomes]
rs60252802	0.98[ASN][1000 genomes]
rs6603783	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6603785	0.84[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap]
rs6657544	0.88[EUR][1000 genomes]
rs6671424	0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6675798	0.86[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687563	0.91[ASN][1000 genomes]
rs6697886	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs7515488	0.94[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs7528416	0.84[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7536250	0.89[ASN][1000 genomes]
rs7536568	0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
FAM132A	Distal transcriptional regulation
UBE2J2	Distal transcriptional regulation
RNF223	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)