SNP Report
Basic Infomation
| Name | rs6671424 dbSNP |
|---|---|
| Location | chr:1,1160665 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10907175 | 0.82[CHB][hapmap] |
| rs11260566 | 0.84[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs12036216 | 1.00[CEU][hapmap];0.92[TSI][hapmap] |
| rs12087719 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12089192 | 0.90[ASN][1000 genomes] |
| rs12093154 | 0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs12096091 | 0.90[ASN][1000 genomes] |
| rs2297863 | 0.90[ASN][1000 genomes] |
| rs2297864 | 0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2298211 | 0.90[EUR][1000 genomes] |
| rs2298212 | 0.90[EUR][1000 genomes] |
| rs34067070 | 0.93[EUR][1000 genomes] |
| rs34115518 | 0.95[EUR][1000 genomes] |
| rs34279802 | 0.93[EUR][1000 genomes] |
| rs35339498 | 0.91[EUR][1000 genomes] |
| rs35659545 | 0.95[EUR][1000 genomes] |
| rs35916760 | 0.93[EUR][1000 genomes] |
| rs36057244 | 0.93[EUR][1000 genomes] |
| rs3753342 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3753343 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3766186 | 0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3766187 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3766188 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3766189 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3813198 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3813199 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3818646 | 0.83[CHB][hapmap] |
| rs55683245 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs55701216 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55717744 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55893507 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56013947 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56070543 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56316126 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56378990 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60252802 | 0.90[ASN][1000 genomes] |
| rs6603786 | 0.84[ASN][1000 genomes] |
| rs6675798 | 0.84[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs6687563 | 0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6697886 | 0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7515488 | 0.85[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7528416 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7536250 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7536568 | 0.99[ASN][1000 genomes] |
| rs9659553 | 0.94[EUR][1000 genomes] |
| rs9661697 | 0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SDF4 | Proximal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| B3GALT6 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| SDF4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014