SNP Report

Basic Infomation

Name	rs34279802 dbSNP
Location	chr:1,1145467
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10907175	0.91[ASN][1000 genomes]
rs10907176	0.91[ASN][1000 genomes]
rs12060374	0.90[ASN][1000 genomes]
rs12060422	0.90[ASN][1000 genomes]
rs12061357	0.90[ASN][1000 genomes]
rs12062042	0.91[ASN][1000 genomes]
rs12062271	0.90[ASN][1000 genomes]
rs12063897	0.84[ASN][1000 genomes]
rs12065129	0.90[ASN][1000 genomes]
rs12066103	0.91[ASN][1000 genomes]
rs12087719	0.93[EUR][1000 genomes]
rs2298211	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2298212	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28460227	0.90[ASN][1000 genomes]
rs28648687	0.90[ASN][1000 genomes]
rs34067070	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34115518	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35339498	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35659545	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35916760	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36057244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753342	0.93[EUR][1000 genomes]
rs3753343	0.93[EUR][1000 genomes]
rs3766186	0.91[EUR][1000 genomes]
rs3766187	0.93[EUR][1000 genomes]
rs3766188	0.93[EUR][1000 genomes]
rs3766189	0.93[EUR][1000 genomes]
rs3813198	0.91[EUR][1000 genomes]
rs3813199	0.93[EUR][1000 genomes]
rs55683245	0.93[EUR][1000 genomes]
rs55701216	0.93[EUR][1000 genomes]
rs55717744	0.93[EUR][1000 genomes]
rs55893507	0.93[EUR][1000 genomes]
rs56013947	0.93[EUR][1000 genomes]
rs56070543	0.93[EUR][1000 genomes]
rs56316126	0.93[EUR][1000 genomes]
rs6671424	0.93[EUR][1000 genomes]
rs6687563	0.89[EUR][1000 genomes]
rs6694487	0.90[ASN][1000 genomes]
rs7528416	0.91[EUR][1000 genomes]
rs7536250	0.88[EUR][1000 genomes]
rs9659213	0.90[ASN][1000 genomes]
rs9659458	0.90[ASN][1000 genomes]
rs9659553	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9661697	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TNFRSF18	Proximal transcriptional regulation
C1orf159	Distal transcriptional regulation
SDF4	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)