SNP Report

Basic Infomation

Name	rs6697886 dbSNP
Location	chr:1,1173611
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11260566	0.89[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12087719	0.88[ASN][1000 genomes]
rs12089192	0.96[ASN][1000 genomes]
rs12093154	0.95[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12096091	0.98[ASN][1000 genomes]
rs2297863	0.98[ASN][1000 genomes]
rs2297864	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs3753342	0.88[ASN][1000 genomes]
rs3753343	0.88[ASN][1000 genomes]
rs3766186	0.84[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3766187	0.84[ASN][1000 genomes]
rs3766188	0.88[ASN][1000 genomes]
rs3766189	0.88[ASN][1000 genomes]
rs3813198	0.88[ASN][1000 genomes]
rs3813199	0.84[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3818646	0.82[CHD][hapmap]
rs4567233	0.81[EUR][1000 genomes]
rs55683245	0.87[ASN][1000 genomes]
rs55701216	0.88[ASN][1000 genomes]
rs55717744	0.88[ASN][1000 genomes]
rs55893507	0.88[ASN][1000 genomes]
rs56013947	0.87[ASN][1000 genomes]
rs56070543	0.88[ASN][1000 genomes]
rs56316126	0.88[ASN][1000 genomes]
rs56378990	0.88[ASN][1000 genomes]
rs60252802	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6603785	0.83[ASW][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.86[LWK][hapmap];0.92[YRI][hapmap]
rs6671424	0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6675798	1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs6687563	0.89[ASN][1000 genomes]
rs7515488	0.86[CEU][hapmap];0.94[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7528416	0.84[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7536250	0.87[ASN][1000 genomes]
rs7536568	0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ACAP3	Distal transcriptional regulation
TTLL10	Distal transcriptional regulation
C1orf159	Distal transcriptional regulation
MIR200B	Distal transcriptional regulation
SDF4	Distal transcriptional regulation
SSU72	Distal transcriptional regulation
RNF223	Distal transcriptional regulation
MIR200A	Distal transcriptional regulation
MIR429	Distal transcriptional regulation
TNFRSF18	Distal transcriptional regulation
TNFRSF4	Distal transcriptional regulation
UBE2J2	Distal transcriptional regulation
ENSG00000230415	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)