SNP Report
Basic Infomation
| Name | rs2297863 dbSNP |
|---|---|
| Location | chr:1,1177474 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11260566 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12087719 | 0.90[ASN][1000 genomes] |
| rs12089192 | 0.98[ASN][1000 genomes] |
| rs12093154 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12096091 | 0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2297864 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3753342 | 0.90[ASN][1000 genomes] |
| rs3753343 | 0.90[ASN][1000 genomes] |
| rs3766186 | 0.89[ASN][1000 genomes] |
| rs3766187 | 0.86[ASN][1000 genomes] |
| rs3766188 | 0.90[ASN][1000 genomes] |
| rs3766189 | 0.90[ASN][1000 genomes] |
| rs3813198 | 0.90[ASN][1000 genomes] |
| rs3813199 | 0.90[ASN][1000 genomes] |
| rs4567233 | 0.81[EUR][1000 genomes] |
| rs55683245 | 0.89[ASN][1000 genomes] |
| rs55701216 | 0.90[ASN][1000 genomes] |
| rs55717744 | 0.90[ASN][1000 genomes] |
| rs55893507 | 0.90[ASN][1000 genomes] |
| rs56013947 | 0.89[ASN][1000 genomes] |
| rs56070543 | 0.90[ASN][1000 genomes] |
| rs56316126 | 0.90[ASN][1000 genomes] |
| rs56378990 | 0.90[ASN][1000 genomes] |
| rs60252802 | 0.98[ASN][1000 genomes] |
| rs6603783 | 0.96[EUR][1000 genomes] |
| rs6657544 | 0.88[EUR][1000 genomes] |
| rs6671424 | 0.90[ASN][1000 genomes] |
| rs6675798 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6687563 | 0.91[ASN][1000 genomes] |
| rs6697886 | 0.98[ASN][1000 genomes] |
| rs7515488 | 0.91[ASN][1000 genomes] |
| rs7528416 | 0.90[ASN][1000 genomes] |
| rs7536250 | 0.89[ASN][1000 genomes] |
| rs7536568 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM132A | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014