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rVarBase
SNP Report
Basic Infomation
Name
rs6657544  
dbSNP
Location
chr:1,1186665
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11260566
0.88[EUR][1000 genomes]
rs12093154
0.88[EUR][1000 genomes]
rs12096091
0.87[EUR][1000 genomes]
rs2297863
0.88[EUR][1000 genomes]
rs2297864
0.88[EUR][1000 genomes]
rs4567233
0.95[ASN][1000 genomes]
rs6603783
0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6603785
0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675798
0.89[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
FAM132A
Proximal transcriptional regulation
SCNN1D
Distal transcriptional regulation
RNF223
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)