SNP Report
Basic Infomation
| Name | rs1790597 dbSNP |
|---|---|
| Location | chr:18,67550974 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1469857 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs1550134 | 0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1620963 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs1627417 | 0.83[ASW][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs17081746 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs17208063 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs17800362 | 0.86[JPT][hapmap] |
| rs1788114 | 0.95[YRI][hapmap] |
| rs1788115 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1788244 | 1.00[CHD][hapmap] |
| rs1790930 | 1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs1790942 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs1790969 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4891378 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4891785 | 0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD226 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| STMN1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014