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rVarBase
SNP Report
Basic Infomation
Name
rs1790930  
dbSNP
Location
chr:18,67562677
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1124980
0.88[JPT][hapmap]
rs1620963
0.83[YRI][hapmap]
rs17081766
0.85[CHB][hapmap]
rs17081792
0.85[CHB][hapmap]
rs1788115
1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1790597
1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes]
rs4891785
0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CD226
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)