SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1469857	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1620963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1627417	1.00[JPT][hapmap]
rs17081746	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17208063	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17800362	0.86[JPT][hapmap]
rs1790597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1790930	1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1790942	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1790969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4891378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4891785	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CD226	Proximal transcriptional regulation
CD226	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)