SNP Report
Basic Infomation
| Name | rs17800362 dbSNP |
|---|---|
| Location | chr:18,67515064 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1469857 | 1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1620963 | 0.86[JPT][hapmap] |
| rs1627417 | 0.90[GIH][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap] |
| rs17081746 | 1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17208063 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs1788115 | 0.86[JPT][hapmap] |
| rs1788230 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1788244 | 0.88[JPT][hapmap] |
| rs1790597 | 0.86[JPT][hapmap] |
| rs1790602 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1790942 | 0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs1790969 | 0.86[JPT][hapmap];0.85[TSI][hapmap] |
| rs4891377 | 0.85[EUR][1000 genomes] |
| rs7228448 | 0.87[EUR][1000 genomes] |
| rs72481820 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DOK6 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| IQCE | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014