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rVarBase
SNP Report
Basic Infomation
Name
rs1788244  
dbSNP
Location
chr:18,67544717
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1124980
0.89[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1469857
0.88[JPT][hapmap]
rs17081746
0.88[JPT][hapmap]
rs17800362
0.88[JPT][hapmap]
rs1790597
1.00[CHD][hapmap]
rs1790942
0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1790969
1.00[CHD][hapmap]
rs4891377
0.88[ASN][1000 genomes]
rs7228448
0.88[ASN][1000 genomes]
rs7237611
0.81[TSI][hapmap]
rs7237727
0.81[TSI][hapmap]
rSNP related genes
Symbol
Regulation type
CD226
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
FOSL2
SCAN