SNP Report
Basic Infomation
| Name | rs17823415 dbSNP |
|---|---|
| Location | chr:12,48599189 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 54)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1004746 | 0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1004806 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs10128967 | 0.80[CEU][hapmap];1.00[CHB][hapmap] |
| rs10506276 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10506277 | 0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs10506278 | 0.85[CEU][hapmap] |
| rs10875718 | 1.00[CHB][hapmap] |
| rs10875719 | 1.00[CHB][hapmap] |
| rs11830378 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11830617 | 1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11833380 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11834109 | 0.85[CEU][hapmap] |
| rs11837548 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11837571 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12297820 | 0.80[CEU][hapmap];1.00[CHB][hapmap] |
| rs12301562 | 0.80[CEU][hapmap];1.00[CHB][hapmap] |
| rs1489112 | 1.00[YRI][hapmap] |
| rs17122802 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17122918 | 0.85[CEU][hapmap] |
| rs17122920 | 0.85[CEU][hapmap] |
| rs17224674 | 0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs17224828 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17225198 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17225261 | 0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs17225751 | 0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs17226359 | 0.85[CEU][hapmap] |
| rs17226506 | 0.85[CEU][hapmap] |
| rs17226723 | 0.85[CEU][hapmap] |
| rs17823193 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17823313 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17823565 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17824705 | 0.85[CEU][hapmap] |
| rs17824989 | 0.85[CEU][hapmap] |
| rs17825013 | 0.85[CEU][hapmap] |
| rs34093317 | 1.00[ASN][1000 genomes] |
| rs55638557 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55654871 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56116946 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs56205628 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs56378908 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7138353 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7297558 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7301153 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7301509 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7307383 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7307676 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7307874 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7310715 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7310935 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73304917 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs74089125 | 1.00[ASN][1000 genomes] |
| rs74089159 | 0.89[EUR][1000 genomes] |
| rs74089163 | 0.89[EUR][1000 genomes] |
| rs9630296 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR10AD1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014