SNP Report

Basic Infomation

Name	rs56116946 dbSNP
Location	chr:12,48601083
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 60)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1004746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1004806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10506277	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10506278	0.87[AMR][1000 genomes]
rs11830378	0.89[AMR][1000 genomes]
rs11833380	0.89[AMR][1000 genomes]
rs11837548	0.89[AMR][1000 genomes]
rs11837571	0.89[AMR][1000 genomes]
rs17224674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17224828	0.89[AMR][1000 genomes]
rs17225198	0.89[AMR][1000 genomes]
rs17225261	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17225751	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17226359	0.87[AMR][1000 genomes]
rs17226506	0.87[AMR][1000 genomes]
rs17226723	0.87[AMR][1000 genomes]
rs17823193	0.89[AMR][1000 genomes]
rs17823313	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17823415	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17823565	0.89[AMR][1000 genomes]
rs17824705	0.87[AMR][1000 genomes]
rs17824989	0.87[AMR][1000 genomes]
rs17825013	0.87[AMR][1000 genomes]
rs2228501	0.89[AMR][1000 genomes]
rs3936179	0.89[AMR][1000 genomes]
rs4075914	0.89[AMR][1000 genomes]
rs41291959	0.89[AMR][1000 genomes]
rs41291961	0.89[AMR][1000 genomes]
rs55638557	0.89[AMR][1000 genomes]
rs55654871	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55682541	0.89[AMR][1000 genomes]
rs55752728	0.89[AMR][1000 genomes]
rs55763362	0.87[AMR][1000 genomes]
rs55854069	0.87[AMR][1000 genomes]
rs55890195	0.86[EUR][1000 genomes]
rs55894137	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55920439	0.87[AMR][1000 genomes]
rs55945889	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56049209	0.89[AMR][1000 genomes]
rs56084718	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56110736	0.87[AMR][1000 genomes]
rs56187356	0.86[EUR][1000 genomes]
rs56205628	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56288528	0.89[AMR][1000 genomes]
rs56378908	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56383074	0.87[AMR][1000 genomes]
rs56412095	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7138353	0.89[AMR][1000 genomes]
rs7297558	0.89[AMR][1000 genomes]
rs7301153	0.89[AMR][1000 genomes]
rs7301509	0.89[AMR][1000 genomes]
rs7307383	0.89[AMR][1000 genomes]
rs7307676	0.89[AMR][1000 genomes]
rs7307874	0.89[AMR][1000 genomes]
rs7310715	0.89[AMR][1000 genomes]
rs7310935	0.89[AMR][1000 genomes]
rs73304917	0.89[AMR][1000 genomes]
rs74089155	0.86[EUR][1000 genomes]
rs751315	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs751316	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
OR10AD1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)