SNP Report

Basic Infomation

Name	rs55945889 dbSNP
Location	chr:12,48572158
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1004746	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1004806	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10506276	0.84[EUR][1000 genomes]
rs10506277	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11830378	0.84[EUR][1000 genomes]
rs17122802	0.84[EUR][1000 genomes]
rs17224674	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17224828	0.84[EUR][1000 genomes]
rs17225261	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17225751	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17607800	0.87[AFR][1000 genomes]
rs17823193	0.84[EUR][1000 genomes]
rs2228501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3936179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4075914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41291959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41291961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55682541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55707383	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs55752728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55886138	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55890195	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55894137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55953382	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56049209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56116946	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56187356	1.00[EUR][1000 genomes]
rs56205628	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56288528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56378908	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73304917	0.86[EUR][1000 genomes]
rs74089155	1.00[EUR][1000 genomes]
rs74089159	0.88[EUR][1000 genomes]
rs74089163	0.88[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000269514	Distal transcriptional regulation
ASB8	Distal transcriptional regulation
C12orf68	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)