SNP Report
Basic Infomation
| Name | rs55953382 dbSNP |
|---|---|
| Location | chr:12,48495907 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1004746 | 0.84[EUR][1000 genomes] |
| rs1004806 | 0.84[EUR][1000 genomes] |
| rs10506277 | 0.84[EUR][1000 genomes] |
| rs12301562 | 0.87[EUR][1000 genomes] |
| rs12316682 | 0.81[EUR][1000 genomes] |
| rs17224674 | 0.84[EUR][1000 genomes] |
| rs17607800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2228501 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3936179 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4075914 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs41291959 | 0.87[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs41291961 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs55682541 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs55707383 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55752728 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs55820056 | 0.83[EUR][1000 genomes] |
| rs55880517 | 0.83[AMR][1000 genomes] |
| rs55886138 | 0.93[EUR][1000 genomes] |
| rs55890195 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs55894137 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs55945889 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs56049209 | 0.87[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56187356 | 0.88[EUR][1000 genomes] |
| rs56198302 | 0.83[AMR][1000 genomes] |
| rs56205628 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs56288528 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs56378908 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs60209369 | 0.87[EUR][1000 genomes] |
| rs74089155 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| PFKM | Proximal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| ENSG00000258051 | Distal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014