SNP Report
Basic Infomation
| Name | rs55820056 dbSNP |
|---|---|
| Location | chr:12,48497737 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128967 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10128968 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12301562 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12316682 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2450995 | 1.00[ASN][1000 genomes] |
| rs41291959 | 0.82[EUR][1000 genomes] |
| rs41291963 | 1.00[ASN][1000 genomes] |
| rs41291967 | 1.00[ASN][1000 genomes] |
| rs55707383 | 0.83[EUR][1000 genomes] |
| rs55953382 | 0.83[EUR][1000 genomes] |
| rs56049209 | 0.82[EUR][1000 genomes] |
| rs56345199 | 0.87[AMR][1000 genomes] |
| rs57956448 | 1.00[ASN][1000 genomes] |
| rs58317398 | 1.00[ASN][1000 genomes] |
| rs60209369 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60679254 | 1.00[ASN][1000 genomes] |
| rs73304917 | 1.00[ASN][1000 genomes] |
| rs74089110 | 1.00[ASN][1000 genomes] |
| rs74089159 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74089163 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9630296 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| PFKM | Proximal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| ENSG00000258051 | Distal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014