SNP Report
Basic Infomation
| Name | rs12301562 dbSNP |
|---|---|
| Location | chr:12,48484616 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128967 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10128968 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10506276 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs10875718 | 1.00[CHB][hapmap] |
| rs10875719 | 1.00[CHB][hapmap] |
| rs11574026 | 1.00[CHB][hapmap] |
| rs11830378 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs12297820 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs12316682 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17122802 | 0.80[EUR][1000 genomes] |
| rs17224674 | 1.00[GIH][hapmap];0.90[TSI][hapmap] |
| rs17224828 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs17225198 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs17607800 | 0.81[CEU][hapmap] |
| rs17823193 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs17823415 | 0.80[CEU][hapmap];1.00[CHB][hapmap] |
| rs17823565 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs2228501 | 0.83[EUR][1000 genomes] |
| rs3936179 | 0.83[EUR][1000 genomes] |
| rs4075914 | 0.83[EUR][1000 genomes] |
| rs41291959 | 0.86[EUR][1000 genomes] |
| rs41291961 | 0.83[EUR][1000 genomes] |
| rs41291963 | 1.00[ASN][1000 genomes] |
| rs41291967 | 1.00[ASN][1000 genomes] |
| rs55682541 | 0.83[EUR][1000 genomes] |
| rs55707383 | 0.87[EUR][1000 genomes] |
| rs55752728 | 0.83[EUR][1000 genomes] |
| rs55820056 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55886138 | 0.81[EUR][1000 genomes] |
| rs55953382 | 0.87[EUR][1000 genomes] |
| rs56049209 | 0.86[EUR][1000 genomes] |
| rs56288528 | 0.83[EUR][1000 genomes] |
| rs56345199 | 0.87[AMR][1000 genomes] |
| rs57956448 | 1.00[ASN][1000 genomes] |
| rs58317398 | 1.00[ASN][1000 genomes] |
| rs60209369 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60679254 | 1.00[ASN][1000 genomes] |
| rs7297558 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs7301153 | 0.81[CEU][hapmap] |
| rs7301509 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs7307874 | 0.81[CEU][hapmap] |
| rs7310935 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs73304917 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74089110 | 1.00[ASN][1000 genomes] |
| rs74089159 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74089163 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9630296 | 0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014