SNP Report
Basic Infomation
| Name | rs12297820 dbSNP |
|---|---|
| Location | chr:12,48441748 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128967 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10128968 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10506276 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs10875718 | 1.00[CHB][hapmap] |
| rs10875719 | 1.00[CHB][hapmap] |
| rs11574026 | 1.00[CHB][hapmap] |
| rs11830378 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs12301562 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs12316682 | 0.85[EUR][1000 genomes] |
| rs17224674 | 1.00[GIH][hapmap];0.90[TSI][hapmap] |
| rs17224828 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs17225198 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs17607800 | 0.81[CEU][hapmap] |
| rs17823193 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs17823415 | 0.80[CEU][hapmap];1.00[CHB][hapmap] |
| rs17823565 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs56345199 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61917746 | 1.00[ASN][1000 genomes] |
| rs7297558 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs7301153 | 0.81[CEU][hapmap] |
| rs7301509 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs7307874 | 0.81[CEU][hapmap] |
| rs7310935 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs74086501 | 1.00[ASN][1000 genomes] |
| rs9630296 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASB8 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014