SNP Report
Basic Infomation
| Name | rs56187356 dbSNP |
|---|---|
| Location | chr:12,48574354 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1004746 | 0.96[EUR][1000 genomes] |
| rs1004806 | 0.96[EUR][1000 genomes] |
| rs10506276 | 0.84[EUR][1000 genomes] |
| rs10506277 | 0.96[EUR][1000 genomes] |
| rs11830378 | 0.84[EUR][1000 genomes] |
| rs17122802 | 0.84[EUR][1000 genomes] |
| rs17224674 | 0.96[EUR][1000 genomes] |
| rs17224828 | 0.84[EUR][1000 genomes] |
| rs17225261 | 0.82[EUR][1000 genomes] |
| rs17225751 | 0.82[EUR][1000 genomes] |
| rs17823193 | 0.84[EUR][1000 genomes] |
| rs2228501 | 0.93[EUR][1000 genomes] |
| rs3936179 | 0.93[EUR][1000 genomes] |
| rs4075914 | 0.93[EUR][1000 genomes] |
| rs41291959 | 0.89[EUR][1000 genomes] |
| rs41291961 | 0.93[EUR][1000 genomes] |
| rs55682541 | 0.93[EUR][1000 genomes] |
| rs55707383 | 0.88[EUR][1000 genomes] |
| rs55752728 | 0.93[EUR][1000 genomes] |
| rs55886138 | 0.85[EUR][1000 genomes] |
| rs55890195 | 1.00[EUR][1000 genomes] |
| rs55894137 | 1.00[EUR][1000 genomes] |
| rs55945889 | 1.00[EUR][1000 genomes] |
| rs55953382 | 0.88[EUR][1000 genomes] |
| rs55991805 | 0.85[AFR][1000 genomes] |
| rs56049209 | 0.89[EUR][1000 genomes] |
| rs56116946 | 0.86[EUR][1000 genomes] |
| rs56205628 | 0.96[EUR][1000 genomes] |
| rs56288528 | 0.93[EUR][1000 genomes] |
| rs56378908 | 0.96[EUR][1000 genomes] |
| rs7316275 | 0.85[AFR][1000 genomes] |
| rs73304917 | 0.86[EUR][1000 genomes] |
| rs74089155 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74089159 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs74089163 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf68 | Proximal transcriptional regulation |
| ENSG00000269514 | Distal transcriptional regulation |
| PUM2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014